Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs140465890 chr2:3144478 CA/C 2.59E-5 108 15.7 13.1 0 KM Plot
LAML rs141077831 chr17:30403852 T/G 4.46E-5 105 16.23 15.23 0 KM Plot
LAML rs141347987 chr16:71708483 C/CA 0.000186 108 15.2 13.1 0 KM Plot
LAML rs1423089 chr19:12589726 G/A 4.78E-5 110 6.13 23.3 12.65 KM Plot
LAML rs1423524 chr19:16225084 T/A 0.000133 107 16.2 8.13 0 KM Plot
LAML rs142611363 chr9:138982222 CCT/C 0.000119 109 13.2 16.17 0 KM Plot
LAML rs142770266 chr9:138981535 C/CA 0.000119 109 13.2 16.17 0 KM Plot
LAML rs143498862 chr10:78962402 C/CT 7.34E-5 111 13.15 18.78 0 KM Plot
LAML rs143778710 chr17:30419111 CAG/C 4.34E-5 111 14.67 15.23 0.52 KM Plot
LAML rs143955139 chr11:34303453 CAG/C 0.000118 111 13.2 16.3 0 KM Plot
LAML rs144139040 chr19:16245750 CAT/C 7.61E-5 110 16.23 8.13 0 KM Plot
LAML rs1443761 chr7:135641926 A/G 9.82E-5 111 13.2 28.47 0 KM Plot
LAML rs1443762 chr7:135641580 T/C 9.82E-5 111 13.2 28.47 0 KM Plot
LAML rs144556310 chr17:30423341 T/G 4.34E-5 111 14.67 15.23 0.52 KM Plot
LAML rs145110298 chr11:93151302 C/A 5.99E-5 110 6.13 14.13 16.3 KM Plot